Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaaattttcacaaacttttctcttgcatatttgatgcatttaatttctttcaaaattaccatttatctaaaatgttcttgtttcaattggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCCGTGGACACCCTTGTTGAGGAACGCTT

Basic information

species Glycine max
transcript GLYMA02G44460.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g46750.1 (Oryza sativa), 3'ss of exon 5
gttgaaattttcacaaacttttctcttgcatatttga--tgcatttaatttctttcaaaatt--accatttatctaaaatgttcttgtttcaattggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCCGTGGACACCCTTGTTGAGGAACGCTT
          | |  | || ||  |||      | ||  ||  |||  |   | || |  |   | ||   | |||| |        ||| || | | |  || || || || |||||||| || |||||||||||||||||||||||| |||| |||||||||||| | || || ||||| | |||| | || ||||   |
---------gtgaggagctatttccttcttagctagaagtgtctttgctgattgtccatttctaatcacacaactaacacacatcgtttttaaattgca--gCAAAGCTTGTGCCTGTGGGTTACGGGATCAAGAAGTTGCAGATCATGTTGACCATTGTTGATGACTTGGTGTCTGTGGATAGCCTTATCGAAGAACATCT

upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 5
lower sequence: AT5G12110.1 (Arabidopsis thaliana), 3'ss of exon 5
gttgaaattttcacaaacttttctcttgcatatttgatgcatttaatttctttcaaaattaccatttatctaaaatgttcttgtttcaattggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCCGTGGACACCCTTGTTGAGGAACGCTT
      |  |  |  ||  ||| |||    |     |    |  | ||| |||     ||    ||  | |   ||||    |    | ||| |  ||| ||| |||| ||||| || || ||||| |||||  |    ||||||||||| ||||||||||||||||| || ||||||| |||  |||| || |   |
----gtaagtcaaagaatgtttatctattttgcacaagagctcaagttttttt-----ttttttttggtttctgatgt----gagcaatttgttgcagCGAAATTGGTACCTGTTGGTTACGGGATAAAGAAACTCACAATCATGATGACAATTGTTGATGACCTTGTGTCTGTGGACAACCTCATTGAAGACCATCT

upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0009g02410.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------gttgaaattttcacaaacttttctcttgcatatttg-atgcatttaatttctttcaaaatt-accatttatctaaaatgttcttgtttcaattggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCCGTGGACACCCTTGTTGAGGAACGCTT
                              ||          |||||     |    |||  ||  || | | |  |  | || | || | |    ||   ||| |  |      |  | ||| |  ||| ||| ||| ||| || || |||||||| ||||| ||||||||||||||||| ||||| ||||||||||| || |||||  || || | || || |   |
gtatggtttgattattaatttaaacaccctttttccccccttcaaaccgaaattgaccattcttatattcttatgctgaccttgacaactgaatgcttggttaatagttgtgctatggatttgttgcagCAAAATTGGCTCCAGTTGGTTATGGGATAAAGAAATTGCAGATCATGATGACCATTGTGGATGACCTTGTCTCTGTGGATTCCGTTATAGAAGAGCATCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31462182|gb|CD404210.1|CD404210
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGC----AT                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|192299184|gb|FG990456.1|FG990456
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|308098678|gb|HO760419.1|HO760419
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|6072481|gb|AW101868.1|AW101868
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGC----AT                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|9565730|gb|BE475239.1|BE475239
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGGTCCTGTGGGATATGGGATCCAGAAGTTGCAGAACATGATG
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATG
EST: gi|21889907|gb|BQ743120.1|BQ743120
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|192314010|gb|FK010346.1|FK010346
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|192314009|gb|FK010345.1|FK010345
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|254342849|gb|GR859011.1|GR859011
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|19052795|gb|BM731462.1|BM731462
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATAT
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATAT
EST: gi|17963140|gb|BM269892.1|BM269892
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGC----AT                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|41145797|gb|CK606008.1|CK606008
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|14259721|gb|BG882629.1|BG882629
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|38191164|gb|CF920370.1|CF920370
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|17022325|gb|BM093359.1|BM093359
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATA
EST: gi|9259452|gb|BE347599.1|BE347599
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|33388439|gb|CA851646.1|CA851646
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGNGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|18040489|gb|BM308783.1|BM308783
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAG
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAG
EST: gi|5342659|gb|AI794943.1|AI794943
EST:     CCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGC----AT                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: CCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|151409528|gb|EV279336.1|EV279336
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|9563902|gb|BE473411.1|BE473411
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|26057276|gb|CA800190.1|CA800190
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGC----AT                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|6072446|gb|AW101833.1|AW101833
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGC----AT                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|41145960|gb|CK606171.1|CK606171
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|192296967|gb|FG990283.1|FG990283
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|6845830|gb|AW348120.1|AW348120
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|298169624|gb|HO020984.1|HO020984
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTCTATTGTGGGGAGCAT----                         CCAA-CTGGTTCCTGTGGGATATGGGATC
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATC
EST: gi|13791524|gb|BG654115.1|BG654115
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|13563312|gb|BG551532.1|BG551532
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGC----AT                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|192332130|gb|FK024590.1|FK024590
EST:     GAGACTGTCCGCAGTATTGAGATGCC-GGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGA
EST: gi|298190147|gb|HO032268.1|HO032268
EST:     GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCAT----                         CCAAACTGGTTCCTGTGGGATATGGG
genomic: GAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaattt ... attggtaaagCCAAACTGGTTCCTGTGGGATATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttctttcaaaattaccatttatctaaaatgttcttgtttcaattggtaaagCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCCGTGGACACCCTTGTTGAGGAACGCTT
                        atctaaa  putative branch site (score: 3)
           aaaattaccatttatc  TA-rich tract