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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcatactaaacttattcatctgcttttcattcttgttttggggattgcagATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACTGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCC

Basic information

species Glycine max
transcript GLYMA02G44400.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44400.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0009g01800.t01 (Vitis vinifera), 3'ss of exon 5
------------------------------------------------------------------------------------------------------------------------------------------------gtttgcatactaaacttattcatctgcttttcattcttgttttggggattgcagATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACTGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCC
                                                                                                                                                  | |  ||| ||    |||  |||| | |  | |    |  | ||| ||||||||||||| || || ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||  |||| ||
gcaagtactttattgtcatgtgctatgttagccaatcatgatgttagtgcattgcatgctttcctatgttggttcacttatcacgtgaggatattttcatgaacttaaaaagttacataaatattgccgcataagctggtccttactagagtaccaag--aatt--tctgatatcaacttcattacttggggttgcagATGGTAATAAGTACAAAGGAGGCATCTACATGGTTTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCTGGGATGAGATTTTCAGTCCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgcatactaaacttattcatctgcttttcattcttgttttggggattgcagATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACTGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCC
        tactaaa  putative branch site (score: 1)
        atactaaacttatt  TA-rich tract