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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccttctagattctagctagaacatattttctgctatctggttatctttcttcttttcctttacttgttgaataaatgttgttttgtttcaatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAGTTATGACACAAACTGCTCGTGAATAACGTGATGTGGTAGGATCTCAATC

Basic information

species Glycine max
transcript GLYMA02G44250.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44250.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0009g01210.t01 (Vitis vinifera), 3'ss of exon 5
gccttctagattctagctagaacat-attttctgctatctggttatctttcttcttttcctttacttgttgaataaatgttgttttgtttc------aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAGTTATGACACAAACTGCTCGTGAATAACGTGATGTGGTAGGATCTCAATC--
          || | || |     | ||| |||       |||     |||| | | |   |  |    | |   | | || |||| |||       |||| ||||||||||||||||||||  |  |||||||||||||||||  |||||| |  |||||||| ||||||||||  |||| || |||| ||| |  | |   |||   
-------cacttttcgcaaatgtgtgattgtctaagcgtaggtcgagattctccctctgactacccaactaacagatttttattttatttttgatttaatggtgtagCTTTGAGAATAATCCTAGACTGGAAGGTCCAGAGTTGCAGGGACTTGCGAGTTATGATACAAACTGCTAATGAAAAAGGTGAGGTGAT--GCTGAAAATTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719571|gb|AW307218.1|AW307218
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|7147246|gb|AW509168.1|AW509168
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|209710100|gb|BW653555.1|BW653555
EST:     TGTGGTACAATTCCTACATCTGGGCCCTTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|192301521|gb|FG994761.1|FG994761
EST:     TGTGGTACAATTCCTACATTTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|14259491|gb|BG882399.1|BG882399
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|17021803|gb|BM092837.1|BM092837
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|8285001|gb|BE022560.1|BE022560
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|120530833|gb|EH258966.1|EH258966
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|14011806|gb|BG726728.1|BG726728
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|120531133|gb|EH259266.1|EH259266
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|120530964|gb|EH259097.1|EH259097
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|15200986|gb|BI424633.1|BI424633
EST:     ATATTCCATTGAATAA                         CTTTGAGAATAATCCCCCCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: ATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|58020483|gb|CX707225.1|CX707225
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|21677284|gb|BQ629635.1|BQ629635
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|23726214|gb|BU761091.1|BU761091
EST:     TGTGGTACAATTCCTACATCTGGGCCCTTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
EST: gi|21601428|gb|BQ611759.1|BQ611759
EST:     TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA                         CTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG
genomic: TGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttctt ... aatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcttcttttcctttacttgttgaataaatgttgttttgtttcaatgctgtagCTTTGAGAATAATCCCCGCTTGGAAGGTCCAGAGTTGTTGGGACTAGTAAGTTATGACACAAACTGCTCGTGAATAACGTGATGTGGTAGGATCTCAATC
                         aataaatgttgtttt  TA-rich tract