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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cccttcaatcacatatcataaattctagtaggctgtttattgtgttttatcctaccacgtacttttgtttttttccttacttttaaaggtatttctgcagGTTGTTTACAATGCAAAGAAACTTTCTAGTCTTGTTTCAAAGAAGAAGAAAAGGCAGAATTGGCTTGACTACTATGAACTTAAATATTCTAGAAATCAAT

Basic information

species Glycine max
transcript GLYMA02G43910.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 5
--cccttcaatcacatatcataaattctagtaggctgtttat--tgtgttttatcctaccacgtacttttgtttttttccttacttttaaaggtatttctgcagGTTGTTTACAATGCAAAGAAACTTTCTAGTCTTGTTTCAAAGAAGAAGAAAAGGCAGAATTGGCTTGACTACTATGAACTTAAATATTCTAGAAATCAAT
     || ||   | |||| | | |   |  |     | |||  | || | |  | |||||| |||  | ||| || || ||  ||| |  |  | |  |  ||||||| || |||||||| || |||  ||   | ||   | |||||||||||| ||||||||||||||| |||||| | || ||||||   ||||||  ||
ttagttttaactgcttatcgttactaaaaaaaaaaaatctatgctctgatatggcttaccac-taccat-gttcttatcattcatttcatgg--actggtatagGTTGTCTATAATGCAAATAAGCTTGATAAGATGGTCAAAGAGAAGAAGAAAATGCAGAATTGGCTTGATTACTATCAGCTGAAATATGAAAGAAATACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403177|gb|EV272987.1|EV272987
EST:     TGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAG                         GTTGTTTACAATGCAAAGAAACTTTCTAGTCTTGTTTCAAAGAAGAAGAAA
genomic: TGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgtctgatcct ... atttctgcagGTTGTTTACAATGCAAAGAAACTTTCTAGTCTTGTTTCAAAGAAGAAGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatcctaccacgtacttttgtttttttccttacttttaaaggtatttctgcagGTTGTTTACAATGCAAAGAAACTTTCTAGTCTTGTTTCAAAGAAGAAGAAAAGGCAGAATTGGCTTGACTACTATGAACTTAAATATTCTAGAAATCAAT
                            tccttac  putative branch site (score: 2)
                                            tatttct  putative PPT
              tacttttgttttttt  TA-rich tract