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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcattaactaaattcttcctatatatgtttgaattcaaaatacatggatcgctctttcacctttcttctgctactataacatctttgattcttttgatttctctttcagAGACTTTGCTGCATCTAATTTGATAGGAGGAAAAGGTTTAAAGGGAAAATCATGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG

Basic information

species Glycine max
transcript GLYMA02G43530.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43530.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G028307_T01 (Zea mays), 3'ss of exon 6
gtcattaactaaattcttcctatatatgtttgaattcaaaatacatggatcgctctttcacctttcttctgctactataacatctttgattcttttgatttctct-ttcagAGACTTTGCTGCATCTAATTTGATAGGAGGAAAAGGTTTAAAGGGAAAATCATGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG
       | |  ||| | |  ||   | |||  |      | |  |   | ||    | |         || | |      |  |||  | | ||||  | || | | |||   ||| ||| |  ||||   ||| || |  |  || ||    |||| ||| ||||| || || |||||||| |||||||||||||| ||||||||| 
-------attgcattatactcattagtttttataccttgtaaatgtatgttgcctaataaataagaacttgtttc----gtactttttttccctttgcatactatatgcagTTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacctttcttctgctactataacatctttgattcttttgatttctctttcagAGACTTTGCTGCATCTAATTTGATAGGAGGAAAAGGTTTAAAGGGAAAATCATGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG
                                  ttcttttgatttctct  CT-rich tract
                                     ttttgattt  TA-rich tract