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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctttcttatatagtagcaataaccagactatggagctatactttaagagcggcaataatcttttcatttacaaaattttttatgcagACCACCAAGGCTGGAGAGATTGGGTCATCAACTATGCCTCACAAAGTGAATCCTATTGATTTTGAGAACAGCGAAGGTAATCTAGGTGTAGCTAATGGAG

Basic information

species Glycine max
transcript GLYMA02G42130.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42130.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0019g03330.t01 (Vitis vinifera), 3'ss of exon 6
gtgagctttcttatatagtagcaataaccagactatggagctatactttaagagcggcaataatcttttcatttacaaaattttttatgcagACCACCAAGGCTGGAGAGATTGGGTCATCAACTATGCCTCACAAAGTGAATCCTATTGATTTTGAGAACAGCGAAGGTAATCTAGGTGTAGCTAATGGAG
|| ||   ||||| ||   |  ||||     | |  |    | |  | ||  |         ||| ||| |  | |||||| ||    |||||  || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| || || || ||||||||||| |||   ||||||||||
gtaaggaatcttacatga-ataaatatttttattgggtttgtctcatatacaaataatgtggatcatttaacattcaaaatctt--gagcagATAACAAAGGCTGGTGAGATTGGGTCTTCAACCATGCCTCACAAAGTGAATCCTATTGATTTCGAAAATAGTGAAGGTAATCTTGGTAAGGCTAATGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016014|gb|CX702756.1|CX702756
EST:     ATTTTGATAGAGATGTATGGGGCTATATATCTTTGGGTTACTTTAAGCAG                         ACCACCAAGGCTGGAGAGATTGGGTCATCAACTATGCCTCACAAAGTGAAT
genomic: ATTTTGATAGAGATGTATGGGGCTATATATCTTTGGGTTACTTTAAGCAGgtgagctttc ... ttttatgcagACCACCAAGGCTGGAGAGATTGGGTCATCAACTATGCCTCACAAAGTGAAT
EST: gi|57574911|gb|CX547886.1|CX547886
EST:     ATTTTGATAGAGATGTATGGGGCTATATATCTTTGGGTTACTTTAAGCAG                         ACCACCAAGGCTGGAGAGATTGGGTCATCAACTATGCCTCACAAAGTGAAT
genomic: ATTTTGATAGAGATGTATGGGGCTATATATCTTTGGGTTACTTTAAGCAGgtgagctttc ... ttttatgcagACCACCAAGGCTGGAGAGATTGGGTCATCAACTATGCCTCACAAAGTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagctatactttaagagcggcaataatcttttcatttacaaaattttttatgcagACCACCAAGGCTGGAGAGATTGGGTCATCAACTATGCCTCACAAAGTGAATCCTATTGATTTTGAGAACAGCGAAGGTAATCTAGGTGTAGCTAATGGAG
                                           ttttttat  CT-rich tract
                     aataatcttttcattt  TA-rich tract