1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actgaaaataccatgttggtattttttatactgatttcaataaagaacctgcattttaatttggttgcacccttcttattacatgcttgattttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGGGCTTTCAGATGAAGACATATTTGCTGGTAAGGTGACAGACAAGTGGAGG
species | Glycine max |
transcript | GLYMA02G40720.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGA TGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGGEST: gi|193432623|gb|FK398271.1|FK398271
genomic: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGAgtaagtccat ... ttttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGG
EST: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGA TGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGGEST: gi|18040161|gb|BM308455.1|BM308455
genomic: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGAgtaagtccat ... ttttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGG
EST: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGA TGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGGEST: gi|208317136|gb|GE113201.1|GE113201
genomic: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGAgtaagtccat ... ttttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGG
EST: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGA TGCTAGCAGAGGAAGAGTGTATCTTCCAEST: gi|120533005|gb|EH261138.1|EH261138
genomic: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGAgtaagtccat ... ttttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCA
EST: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGA TGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGGEST: gi|13482477|gb|BG511820.1|BG511820
genomic: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGAgtaagtccat ... ttttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGG
EST: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGA TGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGGEST: gi|31455984|gb|CD398012.1|CD398012
genomic: CTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGAgtaagtccat ... ttttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGG
EST: CAGAGATGTTGGAGAGGA TGCTAGCAGAGGAAGAGTGTATCTTCCACTAGATGAGTTGGCTCAAGCAGG
genomic: CAGAGATGTTGGAGAGGAgtaagtccat ... ttttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGG
aacctgcattttaatttggttgcacccttcttattacatgcttgattttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGGGCTTTCAGATGAAGACATATTTGCTGGTAAGGTGACAGACAAGTGGAGG
ttttc CT-rich tract
attttaatttggtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgaaaataccatgttggtattttttatactgatttcaataaagaacctgcattttaatttggttgcacccttcttattacatgcttgattttcaacagTGCTAGCAGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGGGCTTTCAGATGAAGACATATTTGCTGGTAAGGTGACAGACAAGTGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - acctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgct