Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcagcatatacctgtgtaaatatttagtgtcaatagtggacttcgtgattgttctgattgcaagtagtagtatcttgagggatttttttgttaccgaacactgaatatttgatatactttttcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG

Basic information

species Glycine max
transcript GLYMA02G40310.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193312586|gb|FK275222.1|FK275222
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATTAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTA
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTA
EST: gi|151412916|gb|EV282728.1|EV282728
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|208281966|gb|GE080176.1|GE080176
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGG
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGG
EST: gi|254337821|gb|GR849560.1|GR849560
EST:     GAGATGCAAATG-AGATTTGGATG                         ATCA-CCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: GAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|208244387|gb|GE042572.1|GE042572
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|38193867|gb|CF923073.1|CF923073
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|58022083|gb|CX708824.1|CX708824
EST:     ATGAGTAAC-TGAAATGATGAGAGTGGAGATGCAAATGAGGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: ATGAGTAACTTG-AATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|8827357|gb|BE211087.1|BE211087
EST:     GAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: GAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|208057088|gb|GD854179.1|GD854179
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|208314970|gb|GE112262.1|GE112262
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|58020605|gb|CX707347.1|CX707347
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|254337820|gb|GR849559.1|GR849559
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC
EST: gi|16347705|gb|BI973300.1|BI973300
EST:     AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATG                         ATCACCCTGAAGATGATGAAGGAGAAGCGGTTGNNNNNNNNGCTCGCTATC
genomic: AATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGGATGgtgagcagca ... tcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagggatttttttgttaccgaacactgaatatttgatatactttttcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG
                              atttgat  putative branch site (score: 5)
                                      tactttttcgctttt  CT-rich tract
                         tgaatatttgatatac  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcagcatatacctgtgtaaatatttagtgtcaatagtggacttcgtgattgttctgattgcaagtagtagtatcttgagggatttttttgttaccgaacactgaatatttgatatactttttcgcttttagATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG