Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaaattactcctacattgttactttttcctccttttttttattatttcaattctccaattggaaatttgaaatagttaccataattatgtaattgtttgatcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCACCACCAGAAACTGCCTTGGTACCGCGGCAAG

Basic information

species Glycine max
transcript GLYMA02G39230.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39230.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g06730.t01 (Vitis vinifera), 3'ss of exon 6
gtaactaaattactcctacattgttactttttcctcctttttt-ttattatttcaattctccaattggaaatttgaaatagttaccataattatgtaattgtttgatcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCACCACCAGAAACTGCCTTGGTACCGCGGCAAG
         |   |   |  | || |  |  |  |  |    |  |   ||||||| | |        |  ||||||| ||      ||||  | | |||         | ||||| | || |||||||||||||||||||| || |||||||||||||||||  |  | || ||||| || ||||| || ||||||
--------gtgggtaaaatttagtcatctcatattgatgaactgctggaatttcaagtattttgcctta--tttgaaaaagac----taatagtatgattccacctctgt-tgcagGTTTTCGTTATGTGGCTGGACTTTGTTACTTACTTGCATCACCATGGCTATGAGCAAAAACTTCCATGGTATCGGGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014509|gb|CX701251.1|CX701251
EST:     TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGG                         ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
genomic: TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGGgtaactaaat ... tcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
EST: gi|151407473|gb|EV277288.1|EV277288
EST:     TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGG                         ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
genomic: TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGGgtaactaaat ... tcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
EST: gi|46492770|gb|CN472326.1|CN472326
EST:     TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGG                         ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
genomic: TCATAACTAGTCCACTTCTAGTGCTCAAGCTCTATGGAATTCCATATTGGgtaactaaat ... tcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
EST: gi|208219374|gb|GE020164.1|GE020164
EST:     ATAACTAGTCCACTTCTAGTGCTCAAGCTCTAATAGGAATTCCATATTGG                         ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC
genomic: ATAACTAGTCCACTTCTAGTGCTCAAGCTCT-AT-GGAATTCCATATTGGgtaactaaat ... tcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattggaaatttgaaatagttaccataattatgtaattgtttgatcatgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCACCACCAGAAACTGCCTTGGTACCGCGGCAAG
                                       gtttgat  putative branch site (score: 5)
                         ataattatgtaattgt  TA-rich tract