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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttatcatatttagttgtgattgtcaaattataaaaatatttagaaatcaacacttagaaccatgtataaatggttttccattatagGTGTACCGTGTGGATCTCAGGCATGCGGCATGGTTTAGTGCAGTTCCATGGGCTGTGATGGCTGTCACGGGTTACTTTGCTGGCTTGTGGTCGGATATGA

Basic information

species Glycine max
transcript GLYMA02G38930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38930.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G46980.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaagatttatcatatttagttgtgattgtcaaattataaaaatatttagaaatcaacacttagaaccatgtataaatggttttccattatagGTGTACCGTGTGGATCTCAGGCATGCGGCATGGTTTAGTGCAGTTCCATGGGCTGTGATGGCTGTCACGGGTTACTTTGCTGGCTTGTGGTCGGATATGA
|||||     |  ||   |  |||  ||   | | | |       |||||   ||     | ||||   | ||  |||    ||  |    |||| || | |||| | ||||  || || || ||||||||||| |||||||||  | |||||||| |||| || ||| ||||||| || ||||||||| || 
gtaaggccc-tagtaccaacatgttcttaatataatcttgttcgttttagttctc----ttaagaaatttataagaata---ttgtaccgcagGTATATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGGCTTTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814220|gb|BI786495.1|BI786495
EST:     GGNNNNNNNACTGTTCTTTCTTGGATGCCCATATACTTCAGCTCA                         GTGTACCGTGTGGATCTCAGGCATGCGGCATGGTTTAGTGCAGTTCCATGG
genomic: GGTTTTTTTACTGTTCTTTCTTGGATGCCCATATACTTCAGCTCAgtaagattta ... tccattatagGTGTACCGTGTGGATCTCAGGCATGCGGCATGGTTTAGTGCAGTTCCATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaatatttagaaatcaacacttagaaccatgtataaatggttttccattatagGTGTACCGTGTGGATCTCAGGCATGCGGCATGGTTTAGTGCAGTTCCATGGGCTGTGATGGCTGTCACGGGTTACTTTGCTGGCTTGTGGTCGGATATGA
                                          ttttccatt  CT-rich tract
     tatttagaaatcaa  TA-rich tract