1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaaattgcgttcaatactttttgcacggattatgttaaacgatatctcttgcaatttgttccttgtttctatttcatgtgtgttttatgtttccctgttaatggaagggagcgagcttgagtaattaaatgaatgtatactttctcatttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA
species | Glycine max |
transcript | GLYMA02G35500.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCAA--GAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|15203872|gb|BI426640.1|BI426640
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|7478670|gb|AW666357.1|AW666357
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|6071298|gb|AW100685.1|AW100685
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|23733288|gb|BU764826.1|BU764826
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGEST: gi|17519530|gb|BM188572.1|BM188572
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGG
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|298194398|gb|HO041046.1|HO041046
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|15203893|gb|BI426661.1|BI426661
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|31310190|gb|CD395393.1|CD395393
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: CTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|8285802|gb|BE023361.1|BE023361
genomic: CTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|120491259|gb|EH219426.1|EH219426
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|192328211|gb|FK020444.1|FK020444
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|31312274|gb|CD397477.1|CD397477
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: GGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|21995126|gb|BQ786654.1|BQ786654
genomic: GGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|192313774|gb|FK007646.1|FK007646
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAA--GAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|20811431|gb|BQ295909.1|BQ295909
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|7588724|gb|AW704513.1|AW704513
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|151402809|gb|EV272622.1|EV272622
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|16348558|gb|BI974153.1|BI974153
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: GAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAEST: gi|6668126|gb|AW279577.1|AW279577
genomic: GAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAG GTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
genomic: AGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGgtgaaattgc ... atttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAA
tggaagggagcgagcttgagtaattaaatgaatgtatactttctcatttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA
tactttctcatttctt CT-rich tract
taattaaatgaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaattgcgttcaatactttttgcacggattatgttaaacgatatctcttgcaatttgttccttgtttctatttcatgtgtgttttatgtttccctgttaatggaagggagcgagcttgagtaattaaatgaatgtatactttctcatttcttcagGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA