1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggatttgtagatgtacactgtgctttttgttgttcaattgtaattttatttttaacttgaattcttactcaaccccctttttatttctgttttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCACCACCAACAACAAAGACAAAATTGTACCTGATGCCATTACTGGGGCAG
species | Glycine max |
transcript | GLYMA02G33320.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|213600861|gb|DB968825.1|DB968825
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|193475489|gb|FK440282.1|FK440282
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: CACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|213590361|gb|DB971523.1|DB971523
genomic: CACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|208322550|gb|GE125195.1|GE125195
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|31561930|gb|CD487768.1|CD487768
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|209710522|gb|BW662058.1|BW662058
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|7639460|gb|AW733782.1|AW733782
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|208317400|gb|GE113297.1|GE113297
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: GGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|192334661|gb|FK025880.1|FK025880
genomic: GGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGCGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|10255267|gb|BE823033.1|BE823033
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|193310065|gb|FK275893.1|FK275893
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|209710523|gb|BW662059.1|BW662059
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|17023100|gb|BM094134.1|BM094134
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|46492865|gb|CN472421.1|CN472421
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|192334662|gb|FK025881.1|FK025881
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGCGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|214006081|gb|DB986005.1|DB986005
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|298170437|gb|HO019061.1|HO019061
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|192314746|gb|FK005986.1|FK005986
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|209713426|gb|BW679241.1|BW679241
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|193658038|gb|FK601981.1|FK601981
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: CACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|209703490|gb|BW683351.1|BW683351
genomic: CACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|208178822|gb|GD979615.1|GD979615
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|209722595|gb|BW679844.1|BW679844
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|192314745|gb|FK005985.1|FK005985
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|209706732|gb|BW676046.1|BW676046
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|209703489|gb|BW683350.1|BW683350
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|209706733|gb|BW676047.1|BW676047
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|208237995|gb|GE038075.1|GE038075
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: GGAATAGTGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|209722594|gb|BW679843.1|BW679843
genomic: GGAATA-TGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|193381913|gb|FK348442.1|FK348442
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCEST: gi|6915982|gb|AW397512.1|AW397512
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
EST: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
genomic: ATCTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGGgtaatcctct ... tttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCC
ttatttttaacttgaattcttactcaaccccctttttatttctgttttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCACCACCAACAACAAAGACAAAATTGTACCTGATGCCATTACTGGGGCAG
ttcttac putative branch site (score: 2)
ttcttactcaaccccc CT-rich tract
tttttatttctgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatttgtagatgtacactgtgctttttgttgttcaattgtaattttatttttaacttgaattcttactcaaccccctttttatttctgttttcttgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGCGACTCTGTTATCTGTTGCCACCACCAACAACAAAGACAAAATTGTACCTGATGCCATTACTGGGGCAG
ggatttg
- - - - - - - - actgtgc
- - - - - - - - - - - - - -tgttgtt