1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttttctatctgaacactgtgcttttgcaatttatacaagttttagtcagtttcatggtttcatcaatgccaaggtttatattatatattttgtatgcagAATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCTGAGGTGGCCTACTGTGCCCGTCATGAATATTGTGAATCTGCGATTGACT
species | Glycine max |
transcript | GLYMA02G28000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCATATGGAACATTGGCTGAACGTGTTGCTGCCATTGCTCAG AATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCTEST: gi|13477679|gb|BG507460.1|BG507460
genomic: TGCATATGGAACATTGGCTGAACGTGTTGCTGCCATTGCTCAGgttagcttgt ... ttgtatgcagAATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCT
EST: TGTCTCATGCATATGGAACATTGGCTGAACGTGTTGCTGCCATTGCTCAG AATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCTEST: gi|9902510|gb|BE611478.1|BE611478
genomic: TGTCTCATGCATATGGAACATTGGCTGAACGTGTTGCTGCCATTGCTCAGgttagcttgt ... ttgtatgcagAATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCT
EST: TGTCTCATGCATATGGAACATTGGCTGAACGTGTTGCTGCCATTGCTCAG AATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCT
genomic: TGTCTCATGCATATGGAACATTGGCTGAACGTGTTGCTGCCATTGCTCAGgttagcttgt ... ttgtatgcagAATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCT
gtcagtttcatggtttcatcaatgccaaggtttatattatatattttgtatgcagAATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCTGAGGTGGCCTACTGTGCCCGTCATGAATATTGTGAATCTGCGATTGACT
aaggtttatattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttctatctgaacactgtgcttttgcaatttatacaagttttagtcagtttcatggtttcatcaatgccaaggtttatattatatattttgtatgcagAATGAAAATTTGGGCAAGCGACTTGCCCATGGTTACCCTTTTTTGGAGGCTGAGGTGGCCTACTGTGCCCGTCATGAATATTGTGAATCTGCGATTGACT
- - - - tctgaac
- - - - - - - -actgtgc
- - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcca