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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttggtatccagttgcatagttgctgatattgcatttcacctatctttcactaaatctgcatttgtgtgtgtggaatgtatatatactgcttataaagcatactctgcttgcaccctttaattaggtgctgtatctaatatggatttgcatgtcataactaacttcagGTATCAGATATCAACCTTTGCCACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGTTGGTGAACTATATTGTTTCTGTTTTGGCA

Basic information

species Glycine max
transcript GLYMA02G26820.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G26820.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g07200.t01 (Vitis vinifera), 3'ss of exon 6
gtaagttttggtatccagttgcatagttgctgatattgcatttcacctatctttcactaaatctgcatttgtgtgtgtggaatgta--tatatactgcttataaagc-atactctgcttgcaccctttaattaggtgctgtatctaatatggatttgcatgtcataactaacttcagGTATCAGATATCAACCTTTGCCACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGTTGGTGAACTATATTGTTTCTGTTTTGGCA
                                                                       |        ||   |     ||  |||| || || | |||  |  |   | | ||   || |  |   | |||| |||||    |||||   | |      |  |||||||||||||||||||| || |||||  | || ||| | ||||||||||| |||||||||||| ||||| |||| || ||||||| |||  ||||||||
-----------------------------------------------------------------------ttcaaaccaaaccaaaccccatggtgctcattaatccataagcctccctctctctactatcaa-tatcg-atctgatatg----tgcatcataaattgttttatagGTATCAGATATCAACCTTGGCAACAAAGCTTGGTGTTAGAAACATTGCTTTTCTTGGTTCTGGACTTTTGCTGGTAAATTATATTGGTTCCATTTTGGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctttaattaggtgctgtatctaatatggatttgcatgtcataactaacttcagGTATCAGATATCAACCTTTGCCACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGTTGGTGAACTATATTGTTTCTGTTTTGGCA
                                           aactaac  putative branch site (score: 1)
                  tatctaatat  TA-rich tract