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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaggggcatgtgtgtgtagagaaaagtcaattttttcttcatttcagcagctgctttattctgatgtttttaaatcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCACTTCTTTATACGGAGTGACCCAGTTGTCATCGCCAACATCAGCTTTTG

Basic information

species Glycine max
transcript GLYMA02G17250.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193339163|gb|FK304440.1|FK304440
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: gi|207819359|gb|GD792821.1|GD792821
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCT
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCT
EST: gi|207788849|gb|GD761205.1|GD761205
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: gi|151397510|gb|EV267383.1|EV267383
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGTTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: gi|193448741|gb|FK411086.1|FK411086
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTCGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: gi|193501095|gb|FK464612.1|FK464612
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: gi|193516721|gb|FK476895.1|FK476895
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: gi|207776789|gb|GD749173.1|GD749173
EST:     TGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
genomic: TGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: gi|208201095|gb|GE001689.1|GE001689
EST:     TGCTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
EST: gi|208238556|gb|GE039028.1|GE039028
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCT
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCT
EST: gi|151398628|gb|EV268499.1|EV268499
EST:     TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG                         GCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagagggg ... atcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttttcttcatttcagcagctgctttattctgatgtttttaaatcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCACTTCTTTATACGGAGTGACCCAGTTGTCATCGCCAACATCAGCTTTTG
                              ttctgat  putative branch site (score: 3)
                          tttattctgatgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagaggggcatgtgtgtgtagagaaaagtcaattttttcttcatttcagcagctgctttattctgatgtttttaaatcggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCACTTCTTTATACGGAGTGACCCAGTTGTCATCGCCAACATCAGCTTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT