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gtagtttaagcttaccactggttctatttaatatatattcatatgatctttgtctcacttatacttcctaaaactcttcttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGAG
species | Glycine max |
transcript | GLYMA02G16010.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAACTAGCTAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATEST: gi|10237572|gb|BE806460.1|BE806460
genomic: GAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATEST: gi|192318300|gb|FK005804.1|FK005804
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCCAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATEST: gi|19346748|gb|BM891628.1|BM891628
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATEST: gi|151396456|gb|EV266333.1|EV266333
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTCCAATTTGGGCAGTTGGAGATEST: gi|192314162|gb|FK011534.1|FK011534
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATEST: gi|37995669|gb|CF807258.1|CF807258
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATEST: gi|10231243|gb|BE800059.1|BE800059
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: AGGCCTGTAGTCTGTTGGTGTGAAACTAGCTTAAGATGGAGCTATAGATG GT-GATGAATACTCTCAAACATCAGTCTCTTCEST: gi|7924612|gb|AW830638.1|AW830638
genomic: AGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGA-Ggtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTC
EST: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATEST: gi|8283020|gb|BE020581.1|BE020581
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: TAGGCCTGGAGTCTGTTGGTGTGAAAATAGCTAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTCCTTCAATTTGGGCAGTTGGAGATEST: gi|254323695|gb|GR836034.1|GR836034
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATEST: gi|192318301|gb|FK005805.1|FK005805
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCCAAAGATGGAGCTATAGAG GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
atattcatatgatctttgtctcacttatacttcctaaaactcttcttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGAG
tcctaaa putative branch site (score: 2)
ctcttcttcaaccc CT-rich tract
ttatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttaagcttaccactggttctatttaatatatattcatatgatctttgtctcacttatacttcctaaaactcttcttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG