1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtttgtttctcttcttttccaaatcaagaattgttaaacctaaatattctttctctaaacaattgagtaatgaaactgttatacttgtctctttggtagGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAG
species | Glycine max |
transcript | GLYMA02G14860.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATG GTTGGCTCAAGATCTGAGGCANATGGCATAGCAAAGTCTGGTGCAAAAATGEST: gi|9204049|gb|BE330273.1|BE330273
genomic: CTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGgtatgaattt ... tctttggtagGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATG
EST: CTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATG GTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATG
genomic: CTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGgtatgaattt ... tctttggtagGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATG
tattctttctctaaacaattgagtaatgaaactgttatacttgtctctttggtagGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAG
ctctaaa putative branch site (score: 3)
cttgtctcttt putative PPT
taaacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttgtttctcttcttttccaaatcaagaattgttaaacctaaatattctttctctaaacaattgagtaatgaaactgttatacttgtctctttggtagGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - -ccaaatc