Sequence
atgc intronic sequence ATGC exonic sequencegtgggtattcatcaatatgtctccaaacttctcttttcttttttactttttcatttttcatagactaaaatatattttagtgcaaaaaactttattaacattgatttcccccccccccccccccccccttatagGTATATGGCCCCTGAATATGCGTCAAGTGGCAAATTGACTGAGAAGTCCGATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAG
Basic information
species | Glycine max |
transcript | GLYMA02G14310.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G14310.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G68690.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgggtattcatcaatatgtctccaaacttctcttttcttttttactttttcatttttcatagactaaaatatattttagtgcaaaaaactttattaacattgatttcccccccccccccccccccccttatagGTATATGGCCCCTGAATATGCGTCAAGTGGCAAATTGACTGAGAAGTCCGATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAG
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--------------------------------------gtaggtgcttgccttgtttgattagttagtcgcatattttggc-------atctagttgatatt--tttcattcatctactt-----------tagCTATATGGCTCCTGAATATGCATCAAGTGGAAAATTAACAGAGAAATCAGATGTATTCTCCTTTGGGGTTGTTCTGCTGGAGTTAATCACTGGACGTAAA
upper sequence: GLYMA02G14310.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0011g02460.t01 (Vitis vinifera), 3'ss of exon 5
gtgggtattcatcaatatgtctccaaacttctcttttcttttttactttttcatttttcata--gactaaaatatatttta-gtgcaaaaaactttattaacattgatttcccccccccccccccccccccttatagGTATATGGCCCCTGAATATGCGTCAAGTGGCAAATTGACTGAGAAGTCCGATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAG
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-----------------------cagagggcacttac--tatttagggatgaattgtccagaatgactaagatttgttttacatgccata---tccatgttcaaagatt---------ccaattgattgaatttcagATATATGGCTCCCGAGTATGCATCAAGTGGCAAGTTAACTGAGAAATCTGATGTCTTCTCTTTTGGAGTTGTCCTTCTGGAGCTTATTACTGGACGGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgcaaaaaactttattaacattgatttcccccccccccccccccccccttatagGTATATGGCCCCTGAATATGCGTCAAGTGGCAAATTGACTGAGAAGTCCGATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAG
ttaacattgatttccc CT-rich tract
aaaaactttattaaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggtattcatcaatatgtctccaaacttctcttttcttttttactttttcatttttcatagactaaaatatattttagtgcaaaaaactttattaacattgatttcccccccccccccccccccccttatagGTATATGGCCCCTGAATATGCGTCAAGTGGCAAATTGACTGAGAAGTCCGATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG