1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttttatgctttcataacatgcatctttggaactgtaataccgtgctcttgtagttcatttctaattgtattgtcctgttcctctaacattcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
species | Glycine max |
transcript | GLYMA02G14300.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG GTTGAGATGATTTTGCAAGCTCTGGAATATGAAATAGEST: gi|61996841|gb|DN676662.1|DN676662
genomic: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgc ... ttcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
EST: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG GTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAGEST: gi|51344946|gb|CO985679.1|CO985679
genomic: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgc ... ttcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
EST: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG GTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAGEST: gi|12689507|gb|BG155843.1|BG155843
genomic: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgc ... ttcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
EST: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG GTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
genomic: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgc ... ttcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
gctcttgtagttcatttctaattgtattgtcctgttcctctaacattcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
ctctaac putative branch site (score: 2)
atttctaattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttatgctttcataacatgcatctttggaactgtaataccgtgctcttgtagttcatttctaattgtattgtcctgttcctctaacattcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -tgctttc
- - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - accgtgc