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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgaatgatgcactaaatatatgcctttctaagatgaactttttatgcattatgtcagaaaatattaacttgatgctgatgatccctatccatgtagcctcgggttttgaagtggccttactcaatagaaattttaacttgttatctgattgtaatctgtttcacatcacattttcgttatgcagATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAGACTGGATACGATCCCATTTGTTCAAAATGGTATCATGGTTTGTCTTACC

Basic information

species Glycine max
transcript GLYMA02G14040.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31473498|gb|CD415511.1|CD415511
EST:     AACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTG                         ATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG
genomic: AACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTGgtaagctgaa ... cgttatgcagATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG
EST: gi|209704152|gb|BW664770.1|BW664770
EST:     TGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTG                         ATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG
genomic: TGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTGgtaagctgaa ... cgttatgcagATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG
EST: gi|192315081|gb|FK010451.1|FK010451
EST:     TGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTG                         ATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG
genomic: TGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTGgtaagctgaa ... cgttatgcagATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttaacttgttatctgattgtaatctgtttcacatcacattttcgttatgcagATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAGACTGGATACGATCCCATTTGTTCAAAATGGTATCATGGTTTGTCTTACC
                                         ttttcgtt  CT-rich tract
                  attgtaat  TA-rich tract