Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaagttacatttattctaactgtttagatcattatctgagagttaaagtctttaatgagttgtgcattttttttatatgtatgtatattttgacttattaacatatatatatatatatatatatagGAAGGAAGTCAAGAAACTGTGGCCACAATGATTGGCATGGCACTGGGAATGCTTGTTGCTCGCCTTACCATTGGACACCCACTAGCCATTTGGTTTTCTT

Basic information

species Glycine max
transcript GLYMA02G13010.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G13010.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 9
gttcaagttacatttattctaactgtttagatcattatctgagagttaaagtctttaatgagttgtgcattttttttatatgtatgtatattttgacttattaacatatatatatat-atatatatatagGAAGGAAGTCAAGAAACTGTGGCCACAATGATTGGCATGGCACTGGGAATGCTTGTTGCTCGCCTTACCATTGGACACCCACTAGCCATTTGGTTTTCTT
                                     | ||||  | |   |  |      | ||   | | |    |  | |   ||  |    | ||   | |||  |  | | | |||  |  | |||||||||||||||| || || || |||||| ||||||||||  | ||||||||| |||||||| |||| || |||||| |  | || |||||||| ||||
------------------------------------gtgtgagtataagcattctgggctggatggaaactatacaaacttatgattaagtaactagtttcaaccatcaacttgttttatactttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATGCTTCTTGCTCGCATTACAATGGGACACTCTGTTGCTATTTGGTTCTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatatgtatgtatattttgacttattaacatatatatatatatatatatatagGAAGGAAGTCAAGAAACTGTGGCCACAATGATTGGCATGGCACTGGGAATGCTTGTTGCTCGCCTTACCATTGGACACCCACTAGCCATTTGGTTTTCTT
                        tattaac  putative branch site (score: 1)
            tatattttgacttatt  TA-rich tract