1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttttttggaaaatgtaacaatcatagagtgtaatacacaatttatttaaaagaatgatgtaatgtacatgataatactcttctgttaaaccttttgcagGTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGAGTTTGCTTCTCTCTATTCTCTCCAGCATTCAATTTGGCAACAAATGACC
species | Glycine max |
transcript | GLYMA02G12980.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGGAACTGCAGCTTTTCTTATAGAGCTTGAGNNNNNNNGATCCATTAAG GTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGAEST: gi|254322156|gb|GR837570.1|GR837570
genomic: CAGGAACTGCAGCTTTTCTTATAGAGCTTGAGAAAAAAAGATCCATTAAGgtaagtggtt ... ccttttgcagGTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGA
EST: AGGAACTGCAGCTTTTCTTATAGAGCTTGAGNNNNNNNGATCCATTAAG GTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGAEST: gi|254348161|gb|GR851840.1|GR851840
genomic: AGGAACTGCAGCTTTTCTTATAGAGCTTGAGAAAAAAAGATCCATTAAGgtaagtggtt ... ccttttgcagGTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGA
EST: CAGGAACTGCAGCTTTTCTTATAGAGCTTGAGNNNNNNNGATCCATTAAG GTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGA
genomic: CAGGAACTGCAGCTTTTCTTATAGAGCTTGAGAAAAAAAGATCCATTAAGgtaagtggtt ... ccttttgcagGTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGA
tttaaaagaatgatgtaatgtacatgataatactcttctgttaaaccttttgcagGTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGAGTTTGCTTCTCTCTATTCTCTCCAGCATTCAATTTGGCAACAAATGACC
ccttttgc CT-rich tract
atgataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttggaaaatgtaacaatcatagagtgtaatacacaatttatttaaaagaatgatgtaatgtacatgataatactcttctgttaaaccttttgcagGTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGAGTTTGCTTCTCTCTATTCTCTCCAGCATTCAATTTGGCAACAAATGACC
- - - - - - - - - - - - - - - - -atacaca
- - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtac