1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcaagagtggtgtcttcaactgagtcactcctaattaactgcataattatgtttcttgttattatttggtttataaactaaagtgatgctctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
species | Glycine max |
transcript | GLYMA02G12930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGANGAATG-AG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|37994792|gb|CF806381.1|CF806381
genomic: TTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGA-TGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|207817655|gb|GD791016.1|GD791016
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: AGAGACAACCTTACTCTCTGGACTTCCGATTTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|207727273|gb|GD700885.1|GD700885
genomic: AGAGACAACCTTACTCTCTGGACTTCCGA-TTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: AGAGACAACCTTACTTCTCTTGGTACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|12689676|gb|BG156012.1|BG156012
genomic: AGAGACAACCTTAC-TCTC-TGG-ACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|18690824|gb|BM519672.1|BM519672
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|7284525|gb|AW597114.1|AW597114
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|31468373|gb|CD410401.1|CD410401
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|193448250|gb|FK415873.1|FK415873
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCGGAGCCTGAGEST: gi|7692312|gb|AW760421.1|AW760421
genomic: GACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAANCTGAAGAAGCCAAACCTTCTGAGCCTGANEST: gi|57574121|gb|CX547096.1|CX547096
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|192326726|gb|FK018883.1|FK018883
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG -TGAGGACAACATAACAGCTGA-GAAGCEST: gi|208072943|gb|GD868526.1|GD868526
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGC
EST: AGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|208227133|gb|GE022372.1|GE022372
genomic: AGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: AGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGEST: gi|7924046|gb|AW830054.1|AW830054
genomic: AGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAEST: gi|38193306|gb|CF922512.1|CF922512
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGA
EST: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAG GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
genomic: GTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaat ... tctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
aattatgtttcttgttattatttggtttataaactaaagtgatgctctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
aactaaa putative branch site (score: 2)
tgctctc putative PPT
ttgttattatttggtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaagagtggtgtcttcaactgagtcactcctaattaactgcataattatgtttcttgttattatttggtttataaactaaagtgatgctctcgtgcagGTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC