1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatattttcatctgattattatcataaggtcaatacaatactattttgcttgctatgatgatgtagagtcttgatctctgtatactacattcatgattctgtctgctgaattatgattttttatgtttctctcaacttttttctggtatcattttgctgatctctgtttttcctccactgctttccagTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCGTCCTATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAA
species | Glycine max |
transcript | GLYMA02G12700.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTG TGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCEST: gi|6718836|gb|AW306483.1|AW306483
genomic: GATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTGgtaatatttt ... tgctttccagTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTC
EST: GATAGCAAAATGCCCCAATGGCCCATCTGTAAAAATTTTAGTTAGTGCTG TGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAEST: gi|192299747|gb|FG990042.1|FG990042
genomic: GATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTGgtaatatttt ... tgctttccagTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAA
EST: GATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTG TGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCEST: gi|8827473|gb|BE211203.1|BE211203
genomic: GATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTGgtaatatttt ... tgctttccagTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTC
EST: GATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTG TGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTC
genomic: GATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTGgtaatatttt ... tgctttccagTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTC
aacttttttctggtatcattttgctgatctctgtttttcctccactgctttccagTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCGTCCTATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAA
tgctgat putative branch site (score: 3)
tctctgtttttcctcc CT-rich tract
tatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattttcatctgattattatcataaggtcaatacaatactattttgcttgctatgatgatgtagagtcttgatctctgtatactacattcatgattctgtctgctgaattatgattttttatgtttctctcaacttttttctggtatcattttgctgatctctgtttttcctccactgctttccagTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCGTCCTATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG