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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatatttactacaattttgtattgttagattacctttaaaatgagattttcttcactgttgtttttgtatttaagttggctatttcatgtttgatctatgcagAATCATGTTCCTATCAGCATTGTGACATAGGATCAACTTTCATACCAAAGCTTCAGGGGAAATTTTTGGCCACGGAAAATTTCTTTTACACATCAAAG

Basic information

species Glycine max
transcript GLYMA02G11980.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11980.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0026g02490.t01 (Vitis vinifera), 3'ss of exon 5
----gttatatttactacaattttgtattgttagattacctttaaaatgagattttcttcactgttgttttt--gtatttaagttggctatttcatgtttgatctatgcagAATCATGTTCCTATCAGCATTGTGACATAGGATCAACTTTCATACCAAAGCTTCAGGGGAAATTTTTGGCCACGGAAAATTTCTTTTACACATCAAAG
       |||||| ||| ||   | || | ||   |||  |  |  |  || || | ||  || ||    |   |||  ||| |  | |  |  |    |||   ||| |||   |||||| ||||| || ||   | |||| |||||||| || || |||||||| || || |||||||| || |||||||||||||| |||||||||
gtttaaaatattttcta-aacactctacttttgctttatgtggatca-aagtttctgtttgctttttgcgtgaagtaactaactatgatcctctacacctgaa--atgtagAGAGATGTTCATATCATCACTG---CTTAGGTTCAACTTTTATGCCCAAGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcactgttgtttttgtatttaagttggctatttcatgtttgatctatgcagAATCATGTTCCTATCAGCATTGTGACATAGGATCAACTTTCATACCAAAGCTTCAGGGGAAATTTTTGGCCACGGAAAATTTCTTTTACACATCAAAG
                                        gtttgat  putative branch site (score: 5)
          ttgtttttgtatttaa  TA-rich tract