1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttaccttaaaaatatcaagctgtagtttcacttttgatattatgtcaacaagctagctagtggacctgatttcaagcctaattcatattgcttggtgcagTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATAATTCTGATGATGATCCATCCAATTTTTTCTCC
species | Glycine max |
transcript | GLYMA02G11960.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATT TTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATEST: gi|18039590|gb|BM307884.1|BM307884
genomic: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggcatt ... cttggtgcagTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
EST: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATT TTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATEST: gi|9564988|gb|BE474497.1|BE474497
genomic: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggcatt ... cttggtgcagTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
EST: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATT NTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
genomic: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggcatt ... cttggtgcagTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
caacaagctagctagtggacctgatttcaagcctaattcatattgcttggtgcagTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATAATTCTGATGATGATCCATCCAATTTTTTCTCC
gcctaat putative branch site (score: 3)
taattcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaccttaaaaatatcaagctgtagtttcacttttgatattatgtcaacaagctagctagtggacctgatttcaagcctaattcatattgcttggtgcagTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATAATTCTGATGATGATCCATCCAATTTTTTCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - -aaaaata
- - - - - - - - - gctgtag
- - - - - - - - - - - - - - - - - - - - - - - - caagcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcaagc