1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taccgaagaccataagtatggatgttttattatattaacttgtttaccatttattcttttgattgagaaggatttctgacgtttgtttccattttttaagCCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGG
species | Glycine max |
transcript | GLYMA02G11300.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGA CCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGTEST: gi|20448599|gb|BQ252723.1|BQ252723
genomic: CTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGAgtattcttct ... attttttaagCCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGT
EST: CTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGA CCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGTEST: gi|20812041|gb|BQ296519.1|BQ296519
genomic: CTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGAgtattcttct ... attttttaagCCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGT
EST: CTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGA CCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGTEST: gi|17153859|gb|BM143792.1|BM143792
genomic: CTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGAgtattcttct ... attttttaagCCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGT
EST: CTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGA CCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGT
genomic: CTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGAgtattcttct ... attttttaagCCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGT
accatttattcttttgattgagaaggatttctgacgtttgtttccattttttaagCCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGG
ttctgac putative branch site (score: 2)
tttgtttccatttttt CT-rich tract
ttattcttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccgaagaccataagtatggatgttttattatattaacttgtttaccatttattcttttgattgagaaggatttctgacgtttgtttccattttttaagCCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - tggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttcc