1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatcaaaatcattaagccaccatcagctattttgttttgcatcttgtggttcattttcattagttttattgtttcttgcagCTGTATTTTGACAAAGTGGCTGAGCTAACTTTGAGCGAGTCTGATTCAGTTCTCTTTAAAGAAGCATTAGTAAGTTTGGCTACTGATTCAGGACTTCATC
species | Glycine max |
transcript | GLYMA02G10220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGACATCAAATTGCCTGTTAAGCATGTATTATCCAGAGAGCTTCAG CTGTATTTTGACAAAGTGGCTGAGCTAACTTTGAGCGAGTCTGATTCAGTTEST: gi|208161279|gb|GD963453.1|GD963453
genomic: CAGTTGACATCAAATTGCCTGTTAAGCATGTATTATCCAGAGAGCTTCAGgtatcaaaat ... tttcttgcagCTGTATTTTGACAAAGTGGCTGAGCTAACTTTGAGCGAGTCTGATTCAGTT
EST: ACATCAAATTGCCTGTTAAGCATGTATTATCCAGAGAGCTTCAG CTGTATTTTGACAAAGTGGCTGAGCTAACTTTGAGCGAGTCTGATTCAGTT
genomic: ACATCAAATTGCCTGTTAAGCATGTATTATCCAGAGAGCTTCAGgtatcaaaat ... tttcttgcagCTGTATTTTGACAAAGTGGCTGAGCTAACTTTGAGCGAGTCTGATTCAGTT
ctattttgttttgcatcttgtggttcattttcattagttttattgtttcttgcagCTGTATTTTGACAAAGTGGCTGAGCTAACTTTGAGCGAGTCTGATTCAGTTCTCTTTAAAGAAGCATTAGTAAGTTTGGCTACTGATTCAGGACTTCATC
ttttattgtttctt CT-rich tract
attttcattagtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcaaaatcattaagccaccatcagctattttgttttgcatcttgtggttcattttcattagttttattgtttcttgcagCTGTATTTTGACAAAGTGGCTGAGCTAACTTTGAGCGAGTCTGATTCAGTTCTCTTTAAAGAAGCATTAGTAAGTTTGGCTACTGATTCAGGACTTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC