Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctttgctcaacttactttcttccaaatgcatttgtaactctgcggatacacttctacattctcttcacaatggacgcttgagcaggttgtaattgcagGTTGTAATTATTGATGATGGAAGTGCTGATGAGACAAAAAGAGTAGCTTTTGAATTTGTGAGGAAATACACAGTAGACAAGGTAAGGGTCATCCTTCTAG

Basic information

species Glycine max
transcript GLYMA02G10150.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10150.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G39630.1 (Arabidopsis thaliana), 3'ss of exon 4
ctctttgctcaacttactttcttccaaatgcatttgtaactctgcggatacacttct-acattctcttcacaatggacgcttgagcagg----ttgtaattgcagGTTGTAATTATTGATGATGGAAGTGCTGATGAGACAAAAAGAGTAGCTTTTGAATTTGTGAGGAAATACACAGTAGACAAGGTAAGGGTCATCCTTCTAG
   | |   |  |  |||   | | ||||   |   ||| || |    |    | || | |  || |   ||   |  | || ||        || |  ||  |||| || ||| ||||||||||||||| |||||  |||||||||||||||||||| ||  | || || |||||| | |||||  ||||||| || |  || |
---tatagactgcccactca-tgctaaatttctcaataagtc-gttattgtgttccttaaaccctatatgcatcagtggattaagtttaccttttctccttttagGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAAAGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTTG

upper sequence: GLYMA02G10150.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0019g01230.t01 (Vitis vinifera), 3'ss of exon 5
---ctctttgctcaacttactttcttccaaatgcatttgtaactctgcggatacacttctacattctcttcacaatggacgcttgagcaggttgtaat-tgcagGTTGTAATTATTGATGATGGAAGTGCTGATGAGACAAAAAGAGTAGCTTTTGAATTTGTGAGGAAATACACAGTAGACAAGGTAAGGGTCATCCTTCTAG
   |    ||  |   ||||| ||| | ||  |||       || |       || ||||  | |    |||||    |  || | ||| ||  |  | | ||||| || ||| | ||||||||||||||||||| |||||| |||||||||||||| ||||| |  ||||||||| ||||||| || ||||| || ||||| |
ttacaggatgtcctgattactatctccaaatagcaacatgggctttatcctagca-ttctctacttctctcacat---atactggggcatgtgttcttgtacagGTGGTGATTGTCGATGATGGAAGTGCTGATGGGACAAACAGAGTAGCTTTTGACTTTGTAAAAAAATACACAATAGACAATGTTAGGGTTATACTTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatacacttctacattctcttcacaatggacgcttgagcaggttgtaattgcagGTTGTAATTATTGATGATGGAAGTGCTGATGAGACAAAAAGAGTAGCTTTTGAATTTGTGAGGAAATACACAGTAGACAAGGTAAGGGTCATCCTTCTAG
                                           ttgtaatt  TA-rich tract