1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaactagatacaaattttgtccatgttatttatgggatgcagcacgatcaattgtttttttcatatatatttgttcaatccttttatgaacttgagtttaatttgctttagccgtagttgactttgactggtctcttgatctttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAAAGAACAAGATTCGAAAGATGCTGTAAGCAGCTATCCAATTCCAAAGGA
species | Glycine max |
transcript | GLYMA02G08440.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAEST: gi|193326186|gb|FK291101.1|FK291101
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: TGAGGGATTTGGATTTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAEST: gi|8402677|gb|BE058311.1|BE058311
genomic: TGAGGGA-TTGGA-TTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAGGGATTGGATTNTGATGCTGCAGGCGATGATAATG ATGATGAGAGTGACACAGAAEST: gi|298162968|gb|HO011701.1|HO011701
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAA
EST: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAAGAGGEST: gi|192302805|gb|FG998487.1|FG998487
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGG
EST: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAEST: gi|9985951|gb|BE659957.1|BE659957
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAEST: gi|193599852|gb|FK551591.1|FK551591
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAEST: gi|298172800|gb|HO020354.1|HO020354
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAEST: gi|151400315|gb|EV270129.1|EV270129
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGA
EST: GGATTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAEST: gi|192302804|gb|FG998486.1|FG998486
genomic: GGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAEST: gi|24205344|gb|BU964597.1|BU964597
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
ttaatttgctttagccgtagttgactttgactggtctcttgatctttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAAAGAACAAGATTCGAAAGATGCTGTAAGCAGCTATCCAATTCCAAAGGA
tcttgat putative branch site (score: 4)
tctcttgatcttttt CT-rich tract
atcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactagatacaaattttgtccatgttatttatgggatgcagcacgatcaattgtttttttcatatatatttgttcaatccttttatgaacttgagtttaatttgctttagccgtagttgactttgactggtctcttgatctttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTAAAGAACAAGATTCGAAAGATGCTGTAAGCAGCTATCCAATTCCAAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT