Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcattattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgctttttttcttttatagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT

Basic information

species Glycine max
transcript GLYMA02G08010.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08010.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 3'ss of exon 5
gttggcattattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgctttttttcttttatagaagcatccttagtattgttcctgctttctcattac-agGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT
                                     || | | |  ||     ||| || | ||    | |||  | | |    | | |  || | |         || ||    |  |||||||||||||||| |||||| |||||||||| ||||| |||||||| ||  ||||||||||||| |||||| | |||||||| ||||| || ||||| |
-------------------------------------gtcagtaac-cactaattcactactattctgatattttctgtgtttgtgta-caatattgtgaccttgatttactttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCATGGCTATGTTATGGAATACAAGGCTCATGATGCTTCTCTCCGTGACAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207740542|gb|GD713808.1|GD713808
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|193318318|gb|FK285840.1|FK285840
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|254324094|gb|GR840519.1|GR840519
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|18039755|gb|BM308049.1|BM308049
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|254326145|gb|GR840737.1|GR840737
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|208034484|gb|GD837180.1|GD837180
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|193412542|gb|FK377773.1|FK377773
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|193385011|gb|FK351493.1|FK351493
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCGTCAG                         GCTGTAATGGCTC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTC
EST: gi|208059940|gb|GD857424.1|GD857424
EST:     TATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|8284610|gb|BE022169.1|BE022169
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|120531526|gb|EH259659.1|EH259659
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTTTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|207826308|gb|GD799433.1|GD799433
EST:     GAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: GAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|254324773|gb|GR834198.1|GR834198
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|120496098|gb|EH224265.1|EH224265
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|298163689|gb|HO012422.1|HO012422
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|19452727|gb|BM954137.1|BM954137
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttttttcttttatagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT
                                ttgttcctgctttctc  CT-rich tract
     ttttcttttatagaa  TA-rich tract