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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttcttcttgctcttgatatgccattctgagatgttatgttttatggagcggccagttctgtagtctttaccatgattttctgatagatagatattatgtaatacaattccatctccatggtcaataggttttagcattttgcttgctttcagTTACTTGGGCTATGGTTTACTAGCAGCTCGTGCAAAGATTTTAGAGGTTTCGGATGATTCTGGAAACCCTTGCATCTTAAATGGCTTTAATG

Basic information

species Glycine max
transcript GLYMA02G07690.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530322|gb|EH258455.1|EH258455
EST:     GTCAAGGAGATGTTCCTAAGGGGAAGAAAATATTACCTCTATGTTCACAG                         TTACTTGGGCTATGGTTTACTAGCAGCTCGTGCAAAGATTTTAGAGGTTTC
genomic: GTCAAGGAGATGTTCCTAAGGGGAAGAAAATATTACCTCTATGTTCACAGgtttttcttc ... ttgctttcagTTACTTGGGCTATGGTTTACTAGCAGCTCGTGCAAAGATTTTAGAGGTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatacaattccatctccatggtcaataggttttagcattttgcttgctttcagTTACTTGGGCTATGGTTTACTAGCAGCTCGTGCAAAGATTTTAGAGGTTTCGGATGATTCTGGAAACCCTTGCATCTTAAATGGCTTTAATG
                                       ttttgcttgctttc  CT-rich tract
                               tttta  TA-rich tract