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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcccctatttaattgggattttttgttcaataatatatggtgtaaactgtaaattatgatagtatgtagtagttttgcatttttttatttggttggcatatattcggtgaaatatgcgatttcttatgattgatttaatggatgtattttcatttgttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA

Basic information

species Glycine max
transcript GLYMA02G07510.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 4
gtatgtttcccctatttaattgggattttttgttcaataatatatggtgtaaactgtaaattatgatagtatgtagtagttttgcatttttttatttggttggcatatattcggtgaaatatgcgatttcttatg-attgatttaatggatgtattttcatttgttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA
                                                                                              |     ||   |  |  |  ||| || |    |||| |||  | |    || || |  ||   | | |||     || | || ||  | |   |    ||||||||||||||||||| || |||||  |||| ||||| || || ||||| || ||||||||||| |||||||| |   |  |||| ||
---------------------------------------------------------------------------------------------gtactagtgat-tccacccaatgatattttt--tttcatatccactccagtattgcaattaacgtaacttggaaaaatga-ttgtttgtgtaattttattgcagTCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAA

upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 5
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtttcccctatttaattgggattttttgttcaataatatatggtgtaaactgtaaattatgatagtatgtagtagttttgcatttttttatttggttggcatatattcggtgaaatatgcgatttcttatgattgatttaatggatgtattttcatttgttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA
                                                                                      |    | || || | | |||      |   |  |  | ||||| | | | || |||  ||||     |||   |||| | |  ||||    |  |       || ||||||| ||||| ||||| || |||||  |||| |||||||| ||||| || || |||||  |||| |||||||||||||| || |||||
-------------------------------------------------------------------------------------gtagaatgatctgctcgacat-----tgcctacttgcgtgatttgtcaggtttcatt--atgg-----tttctctttggttttcttacc--gttatgaactctctttgcagTCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAA

upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtttcccctatttaattgggattttttgttcaataatatatggtgtaaactgtaaattatgatagtatgtagtagttttgcatttttttatttggttggcatatattcggtgaaatatgcgatttcttatgattgatttaatggatgtattttcatttg---ttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA
                                                                                                |||||||   | |||      | | | |  ||  || | ||| ||||  |   |    || | ||||   | ||     ||| || |  | | |||||||||||||||||||||||| ||||||||  |||| || || || |||||||| || || ||||| || ||||||||||||||| | |||||
----------------------------------------------------------------------------------------------gatggttggatgacatt-----gatttttcttttctttctaatttattttttcctttctcttgcctttggcttcctttccccttcttttcttttatgctgtgcagTCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatggatgtattttcatttgttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA
                      ttctgat  putative branch site (score: 3)
       atgtattttcattt  TA-rich tract