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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctaaatttgaactgagattaccgtttcatttttgtttgttttcacaactctgttctagctgtaattcttgtagcttaattgatggcatttgatcagGGTACTGGTTGCCACAGCTTTCATTGTTCTTGGGAATGTTTTTCTAGTTGCTTTTGGCAATCACCAATCGCCTG

Basic information

species Glycine max
transcript GLYMA02G07510.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07510.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 5
gtatgct-aaatttgaactgagattaccgtttcatttttgtttgttttcacaactctgtt-ctagctgtaattcttgt--agcttaattgatggcatttgatcagGGTACTGGTTGCCACAGCTTTCATTGTTCTTGGGAATGTTTTTCTAGTTGCTTTTGGCAATCACCAATCGCCTG
||||| | |||| |||| |||| ||    |   |  ||||    | || | |  |   || | |  | || | ||     |  || |   || || | |  |||||||||||||||||||||| || ||||||||||||||  ||||||| |||||||||||||| ||||| || ||||
gtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGCTTTTGGCAACCACCAGTCACCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297759|gb|FG989965.1|FG989965
EST:     TCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA                         GGTACTGGTTGCCACAGCTTTCATTGTTCTTGGGAATGTTTTTTCTAGTTG
genomic: TCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAAgtatgctaaa ... atttgatcagGGTACTGGTTGCCACAGCTTTCATTGTTCTTGGGAATGTTTTT-CTAGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacaactctgttctagctgtaattcttgtagcttaattgatggcatttgatcagGGTACTGGTTGCCACAGCTTTCATTGTTCTTGGGAATGTTTTTCTAGTTGCTTTTGGCAATCACCAATCGCCTG
                                   aattgat  putative branch site (score: 4)
                                 ttaattgat  TA-rich tract