1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgatactcttatcctcttctaatttgtcacttatcagcgaaaataggtttatgcaaatgccctaaatttgttgccacttacacctcttcagtggttgccatctatcactgtattgctttccattgctattagCTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACGTATATAAGCTGGATTTATCTTAGATACTGGCAGAGGAAACCAGAAACT
species | Glycine max |
transcript | GLYMA02G07160.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAG CTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACEST: gi|192312613|gb|FK004301.1|FK004301
genomic: AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGgtttgatact ... ttgctattagCTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCAC
EST: AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAG CTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCAC
genomic: AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGgtttgatact ... ttgctattagCTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCAC
ttacacctcttcagtggttgccatctatcactgtattgctttccattgctattagCTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACGTATATAAGCTGGATTTATCTTAGATACTGGCAGAGGAAACCAGAAACT
cacttac putative branch site (score: 2)
ctttccatt putative PPT
tatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatactcttatcctcttctaatttgtcacttatcagcgaaaataggtttatgcaaatgccctaaatttgttgccacttacacctcttcagtggttgccatctatcactgtattgctttccattgctattagCTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACGTATATAAGCTGGATTTATCTTAGATACTGGCAGAGGAAACCAGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA