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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcggcaccccatggtttaatacttctagaaactataaagaaagtgataaaaatggggattaatagtttaattttgcatgttgaaacagGTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTAGAACTCATAACTGGAAAACGA

Basic information

species Glycine max
transcript GLYMA02G06430.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06430.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G18470.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaatttcggcaccccatggtttaatacttctagaaactataaaga---aagtgataaaaatggggattaatagtttaattttgcatgttgaaacagGTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTAGAACTCATAACTGGAAAACGA
||||       |||  ||| |   ||  |||  || |||  | | |   ||    |  | |      |   | | ||  ||   ||         || ||||| || |||||||| || ||||| || ||||| || |||||||| ||||||||||| |  || || ||| |||| ||||| |||||||||||||||
gtaagcgttttaccgtatgataagattgttcgtgacactcaagaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtagATATCTAGCTCCAGAATATGCTTCAAGCGGTAAATTAACCGAGAAATCCGATGTTTTCTCTTACGGAGTTATGTTATTGGAACTTATAACTGGAAAACGA

upper sequence: GLYMA02G06430.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 5
--------gtaatttcggcaccccatggtttaatacttctagaaactataaagaaagtgataaaaatgg-ggattaatagtttaattttgcatgttgaaacagGTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTAGAACTCATAACTGGAAAACGA
         | |  | | | ||| |    |    |  |||  ||||     | |   | || |   ||  || | |  |||||   |||  |||   |  ||||||| |||| ||||| || ||||| ||||| ||  | ||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||  | ||
attcttacttgaagttg-ctcccaagcactccccatatctcaaaacaggggaaattcttatgagtctgctggctcagaagtttg--tttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303171|gb|FG997747.1|FG997747
EST:     GTGTCATGGGAACATTCGG                         GTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGA
genomic: GTGTCATGGGAACATTCGGgtaatttcgg ... gttgaaacagGTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagaaagtgataaaaatggggattaatagtttaattttgcatgttgaaacagGTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTAGAACTCATAACTGGAAAACGA
                        attaatagtttaattt  TA-rich tract