1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtcaatttttatgattgtgctcaatttgtggttcgaattatgagctttcgacactcacctcttccatttcacaaatttgaagtttccctcattctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATAAAATCACTCTTCCCCA
species | Glycine max |
transcript | GLYMA02G06380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTEST: gi|17963160|gb|BM269912.1|BM269912
genomic: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAGgtttgttctc ... attctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTT
EST: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTEST: gi|11274284|gb|BF324652.1|BF324652
genomic: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAGgtttgttctc ... attctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTT
EST: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTEST: gi|208159060|gb|GD951785.1|GD951785
genomic: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAGgtttgttctc ... attctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTT
EST: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTEST: gi|192309386|gb|FK000594.1|FK000594
genomic: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAGgtttgttctc ... attctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTT
EST: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTEST: gi|58021399|gb|CX708140.1|CX708140
genomic: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAGgtttgttctc ... attctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTT
EST: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTEST: gi|208143910|gb|GD943669.1|GD943669
genomic: CTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAGgtttgttctc ... attctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTT
EST: CAAGAATATTCCTAGGCTTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTT
genomic: CAAGAATATTCC-AGGC-TTTCTGGAAGgtttgttctc ... attctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTT
tttcgacactcacctcttccatttcacaaatttgaagtttccctcattctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATAAAATCACTCTTCCCCA
cactcac putative branch site (score: 2)
tttccctcattct putative PPT
aaatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaatttttatgattgtgctcaatttgtggttcgaattatgagctttcgacactcacctcttccatttcacaaatttgaagtttccctcattctgatagGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATAAAATCACTCTTCCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - gattgtg
- - - - - - - - - - - - - tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc