1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caataagaactttaatataccccttgttatttctgctgcatatttgtttctttcatgtgctatgcttgccctaatgctaatgttgttccttaatttgcagGATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG
species | Glycine max |
transcript | GLYMA02G06100.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATCATCCAAAG GATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGAEST: gi|6482207|gb|AW201478.1|AW201478
genomic: AGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGgcatgttaaa ... taatttgcagGATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGA
EST: AGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAG GATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGAEST: gi|193562006|gb|FK519433.1|FK519433
genomic: AGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGgcatgttaaa ... taatttgcagGATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGA
EST: AGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATCATCCAAAG GATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGA
genomic: AGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGgcatgttaaa ... taatttgcagGATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGA
gtttctttcatgtgctatgcttgccctaatgctaatgttgttccttaatttgcagGATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG
ttgttcctt CT-rich tract
ttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caataagaactttaatataccccttgttatttctgctgcatatttgtttctttcatgtgctatgcttgccctaatgctaatgttgttccttaatttgcagGATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG
-aataagaa
- - - - - - - - -tacccct
- - - - - - - - - - - - - - - - ctgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg