1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acatgatcactaacatatgttggtataatatgttgtaggtatattcatcaatatatgatttgctaactactcatgaaattttattctgttaaaatatcagATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAGGAATTGTTCCTGGTCTATTTCTG
species | Glycine max |
transcript | GLYMA02G05890.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGCTTCAAACTCCTCTTCATCAGACACGACCATTACTCTGGG-TTTATG ATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAGEST: gi|51337761|gb|CO981627.1|CO981627
genomic: CAGCTTCAAACTCCTCTTCATCAGACACGACCAT-ACTCTGGGGTTTATGgtctgctctc ... aaaatatcagATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAG
EST: GCAGCTTCAAACTCCTCTTCATCAGACACGACCATACTCTGGGGTTTATG ATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAG
genomic: GCAGCTTCAAACTCCTCTTCATCAGACACGACCATACTCTGGGGTTTATGgtctgctctc ... aaaatatcagATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAG
catcaatatatgatttgctaactactcatgaaattttattctgttaaaatatcagATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAGGAATTGTTCCTGGTCTATTTCTG
tgctaac putative branch site (score: 1)
tcatgaaattttattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgatcactaacatatgttggtataatatgttgtaggtatattcatcaatatatgatttgctaactactcatgaaattttattctgttaaaatatcagATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAGGAATTGTTCCTGGTCTATTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
-catgatc
- - - - actaaca
- - - - - - - - - gttggta
- - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa