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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtttaatgatttttttccatacaaactttctttgtccttgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtacttttaatttctggcttccatttgactcaacggttgtttattgtcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGACCAGGCAAATCCATATGAGTACTTAAAAGGGATGATCAACTGTCACAGAA

Basic information

species Glycine max
transcript GLYMA02G04920.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G04920.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G11980.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgaggtttaatgatttttttccatacaaactttctttgtccttgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtacttttaatttctggcttccatt-tgactcaacggttgtttattgtcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGACCAGGCAAATCCATATGAGTACTTAAAAGGGATGATCAACTGTCACAGAA
           |||  | |||  | | | |   | |  |     |||     ||  |||| ||| | |  |  || ||  || |  |  |   |   | |||  |||| ||||  || | | |  |   |  | | |   ||||||||||||||||||||||||||||| ||||| || || |||||| | || |||  |||| | |||||||| |||||||| ||||| |||||||||||||
----------gtgaaatattttgacatataacatttgag-----gttatccttccattacattgtattcctttgtcta--tggaattgttcatt--ctgtaagctctgtcttcacttgttaatggatcttcttgtctatgcagTTCTTAAGATGCCGAGAGGCATGGCTCACTGGAATTCTTGAGGATTTAGATCAGAAAAATGCCTATGAGTATTTAAAAGGCATGATAAACTGTCACAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335101|gb|GR844886.1|GR844886
EST:     GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG                         TTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC
genomic: GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggttta ... ttattgtcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC
EST: gi|254341548|gb|GR852685.1|GR852685
EST:     GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG                         TTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATTTGGAC
genomic: GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggttta ... ttattgtcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC
EST: gi|151410266|gb|EV280081.1|EV280081
EST:     GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG                         TTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC
genomic: GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggttta ... ttattgtcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttggtacttttaatttctggcttccatttgactcaacggttgtttattgtcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGACCAGGCAAATCCATATGAGTACTTAAAAGGGATGATCAACTGTCACAGAA
      tacttttaatttct  TA-rich tract