1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtcaattcagtttaattgctaatttgttattttatgaacagattaagtttgaagtttttaccatactcgtgtttatgcatattactttgattcgtgatgtaaatgaattggaccatgtgattgaatcctgtactttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG
species | Glycine max |
transcript | GLYMA02G04120.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAEST: gi|18735196|gb|BM528624.1|BM528624
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
EST: GTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAGTTTCTCAAAGTGGTTTTCACTCTGTTTCAAEST: gi|6134722|gb|AW133115.1|AW133115
genomic: GTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
EST: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAEST: gi|213601137|gb|DB956473.1|DB956473
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
EST: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAEST: gi|213598625|gb|DB964247.1|DB964247
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
EST: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGEST: gi|192306307|gb|FG995101.1|FG995101
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAG
EST: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAEST: gi|7589883|gb|AW705648.1|AW705648
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
EST: CTCTTACGTCAGAAATCGGTGCCCCACTTGTTGCAACCCTTCCCTTGGA- ATCAAGGGAGAAATTGAGGAATTTEST: gi|151410816|gb|EV280631.1|EV280631
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTT
EST: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAEST: gi|6566595|gb|AW234236.1|AW234236
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
EST: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAEST: gi|213600535|gb|DB960083.1|DB960083
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
EST: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTEST: gi|16346050|gb|BI971645.1|BI971645
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATT
EST: CTCTTACTTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAEST: gi|208274595|gb|GE070229.1|GE070229
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
EST: AATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAEST: gi|193592646|gb|FK547040.1|FK547040
genomic: AATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
EST: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG ATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
genomic: CTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGgtcaattcag ... ttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAA
attcgtgatgtaaatgaattggaccatgtgattgaatcctgtactttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG
ctttgat putative branch site (score: 5)
tcctgtactttttct putative PPT
taaatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaattcagtttaattgctaatttgttattttatgaacagattaagtttgaagtttttaccatactcgtgtttatgcatattactttgattcgtgatgtaaatgaattggaccatgtgattgaatcctgtactttttctacagATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGGTTTTCACTCTGTTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA