1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaaaatgtgcatagttatttattatttaatatatgatagcctgattcttttcatgatttcactgccaaatctattattgactcttgatatcctttttcagAGACAAATTACGGGCATCAAGAAGTGCAATATCAGCAGCTGACATCGCAAATGAGTTCACCCTGGGGGTACCCGGTGAGCCGTTTTCTTTTACCCAGTGC
species | Glycine max |
transcript | GLYMA02G04110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCACTGCTCATACTAAAGAGTTTATCCGAAAACAGATGGAGAAGGAAAT AGACAAATTACGGGCATCAAGAAGTGCAATATCAGCAGCTGACATCGCAAAEST: gi|193336759|gb|FK304525.1|FK304525
genomic: GTCACTGCTCATACTAAAGAGTTTATCCGAAAACAGATGGAGAAGGAAATgtatgtcttc ... cctttttcagAGACAAATTACGGGCATCAAGAAGTGCAATATCAGCAGCTGACATCGCAAA
EST: GTCACTGCTCATACTAAAGAGTTTATCCGAAAACAGATGGAGAAGGAAAT AGACAAATTACGGGCATCAAG
genomic: GTCACTGCTCATACTAAAGAGTTTATCCGAAAACAGATGGAGAAGGAAATgtatgtcttc ... cctttttcagAGACAAATTACGGGCATCAAG
tcttttcatgatttcactgccaaatctattattgactcttgatatcctttttcagAGACAAATTACGGGCATCAAGAAGTGCAATATCAGCAGCTGACATCGCAAATGAGTTCACCCTGGGGGTACCCGGTGAGCCGTTTTCTTTTACCCAGTGC
tatcctttttc CT-rich tract
aaatctattattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaatgtgcatagttatttattatttaatatatgatagcctgattcttttcatgatttcactgccaaatctattattgactcttgatatcctttttcagAGACAAATTACGGGCATCAAGAAGTGCAATATCAGCAGCTGACATCGCAAATGAGTTCACCCTGGGGGTACCCGGTGAGCCGTTTTCTTTTACCCAGTGC
- - -tgtgcat
- - - - - - - - - - - - - - - - - - -agcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgcc