1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactatggcactcatatatgcaaaccccccttggttttcatacaaaatctcctttctctattaatttaatcaattatatatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTTCACAAG
species | Glycine max |
transcript | GLYMA02G03740.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGTATAAAG ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTTEST: gi|151393888|gb|EV263759.1|EV263759
genomic: CTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTTEST: gi|10232292|gb|BE801180.1|BE801180
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: CACCCTAGGACTTGGGAAGCCCAGATCCTGTCTGGTATAAAG ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTTEST: gi|192306018|gb|FG993636.1|FG993636
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTTEST: gi|207834807|gb|GD809032.1|GD809032
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: CTGGTATAAAG ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTTEST: gi|209709438|gb|BW668366.1|BW668366
genomic: CTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG ACCATAGCTCTCATTGCTEST: gi|151396617|gb|EV266494.1|EV266494
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCT
EST: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
gttttcatacaaaatctcctttctctattaatttaatcaattatatatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTTCACAAG
tatctttc CT-rich tract
tttctctattaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatggcactcatatatgcaaaccccccttggttttcatacaaaatctcctttctctattaatttaatcaattatatatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTTCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT