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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtattttgaattacaggttaatacttcacttttgtgtctgctgcctaagccgtgaagtttatttattgaatatgctgaattagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG

Basic information

species Glycine max
transcript GLYMA02G02600.6
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02600.6 (Glycine max), 3'ss of exon 5
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 5
gtacgtattttgaattacaggttaatacttcacttttgtgtctgctgcctaagcc-gtgaagtttatttattgaatatgctga--attagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
              ||  || || |    |        | | |||   | || |  ||    || |||| ||   |  |||||  ||   | || |  | || |||||| || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| ||||||
-------------gttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgttt--tgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283320|gb|AW595928.1|AW595928
EST:     ATAAGGGAAAGCATTAAAACAGAACAACCATGCACA                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAgtacgtattt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|20813714|gb|BQ298192.1|BQ298192
EST:     ATAAGGGAAAGCATTAAAACAGAACAACCATGCACA                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAgtacgtattt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|120529071|gb|EH257205.1|EH257205
EST:     ATAAGGGAAAGCATTAAAACAGAACAACCATGCACA                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAgtacgtattt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccgtgaagtttatttattgaatatgctgaattagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
     tgaagtttatttattg  TA-rich tract