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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtctgctgcctaagccgtgaagtttatttattgaatatgctgaattagttttctgcaacactaacaggaagGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG

Basic information

species Glycine max
transcript GLYMA02G02600.5
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02600.5 (Glycine max), 3'ss of exon 5
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 5
------------------------gtgtctgctgcctaagcc-gtgaagtttatttattgaatatgctga--attagttttctgcaacactaacaggaagGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
                         | | |||   | || |  ||    || |||| ||   |  |||||  ||   | || |  | || |||||| || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| ||||||
gttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgttt--tgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaagtttatttattgaatatgctgaattagttttctgcaacactaacaggaagGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
                                          cactaac  putative branch site (score: 1)
      tttatttattgaatat  TA-rich tract