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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatacttcacttttgtgtctgctgcctaagccgtgaagtttatttattgaatatgctgaattagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG

Basic information

species Glycine max
transcript GLYMA02G02600.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02600.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 5
gttaatacttcactttt-------gtgtctgctgcctaagcc-gtgaagtttatttattgaatatgctga--attagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
||| |   || |||| |        | | |||   | || |  ||    || |||| ||   |  |||||  ||   | || |  | || |||||| || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| ||||||
gttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgtt--ttgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31459894|gb|CD401922.1|CD401922
EST:     GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|15287962|gb|BI471853.1|BI471853
EST:     GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|10236299|gb|BE805187.1|BE805187
EST:     GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTCTCTTCATATCTCACCCGTTCGTGA
genomic: GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|254346945|gb|GR856667.1|GR856667
EST:     GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|17022553|gb|BM093587.1|BM093587
EST:     GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|27427037|gb|CA938557.1|CA938557
EST:     GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCTTATTTTATTCGTTCGTGA
genomic: GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|15203212|gb|BI425980.1|BI425980
EST:     GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTANNN                         NNNNGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|6913295|gb|AW394825.1|AW394825
EST:     GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|13787813|gb|BG650405.1|BG650405
EST:     GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: GAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccgtgaagtttatttattgaatatgctgaattagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
     tgaagtttatttattg  TA-rich tract