1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttttatttgtcttttttccattgttttatttatttatgaagtgacagcatatatggaactgaatatgggtttgggatgtactaaatatttgaactacagGTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATAGGAGGCACTGGCAATATCAGTGCTGACATTGAGAAATTTTGTACAACCTTTT
species | Glycine max |
transcript | GLYMA02G00670.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACA GTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATGGGAEST: gi|192307246|gb|FK002352.1|FK002352
genomic: ACAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACAgtaatgttct ... tgaactacagGTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATAGGA
EST: ACAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACA GTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATAGGAEST: gi|192311355|gb|FK003798.1|FK003798
genomic: ACAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACAgtaatgttct ... tgaactacagGTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATAGGA
EST: GCAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACA GTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATGGGAEST: gi|192300660|gb|FG989647.1|FG989647
genomic: ACAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACAgtaatgttct ... tgaactacagGTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATAGGA
EST: ACAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACA GTAGTCATGAAGCTTGCTCCTGATAGGAAGAEST: gi|151406949|gb|EV276764.1|EV276764
genomic: ACAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACAgtaatgttct ... tgaactacagGTAGTCATGAAGCTTGCTCCTGATAGGAAGA
EST: ACAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACA GTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATAGGA
genomic: ACAAGACTCTGAAGAAGTGGCATGGCTGGCTTGCTAGTTCAAGCTTCACAgtaatgttct ... tgaactacagGTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATAGGA
cagcatatatggaactgaatatgggtttgggatgtactaaatatttgaactacagGTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATAGGAGGCACTGGCAATATCAGTGCTGACATTGAGAAATTTTGTACAACCTTTT
tactaaa putative branch site (score: 1)
atgtactaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttatttgtcttttttccattgttttatttatttatgaagtgacagcatatatggaactgaatatgggtttgggatgtactaaatatttgaactacagGTAGTCATGAAGCTTGCTCCTGATAGGAAGAAGTTTATGGACGTGATAGGAGGCACTGGCAATATCAGTGCTGACATTGAGAAATTTTGTACAACCTTTT
- - - - - - - - - - - - - - - - - - -tgaagtg
- - - - - - - - - - - - - - - - - - - - - - - -gcatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg