1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gcaagtgaagtttttaattacctgtacattttcttgaggaactacatcccattattttgaaattttcctttcttcattagccttataccaaattggatttgcagGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCT
species | Glycine max |
transcript | GLYMA01G44670.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCCCAAAAAGAAAAG GCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAAEST: gi|6747546|gb|AW318002.1|AW318002
genomic: GCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCCCAAAAAGAAAAGgcaagtgaag ... ggatttgcagGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAA
EST: GCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCTCAAAAAGAAAAG GCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATTGEST: gi|193695738|gb|FK640496.1|FK640496
genomic: GCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCCCAAAAAGAAAAGgcaagtgaag ... ggatttgcagGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATTG
EST: CAATCAGAACAGCCCCAAAAAGAAAAAG GCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATT
genomic: CAATCAGAACAGCCCCAAAAAG-AAAAGgcaagtgaag ... ggatttgcagGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATT
cattattttgaaattttcctttcttcattagccttataccaaattggatttgcagGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCT
ttttgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgaagtttttaattacctgtacattttcttgaggaactacatcccattattttgaaattttcctttcttcattagccttataccaaattggatttgcagGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC