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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacaaaatcaaattcactttcatatgtgtgtgcttgttattctaaacaaattttgaattggttcatggattacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTG

Basic information

species Glycine max
transcript GLYMA01G43910.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43910.2 (Glycine max), 3'ss of exon 5
lower sequence: AT5G17060.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgacaaaatcaaattcactttcatatgtgtgtgcttgttat-tctaaacaaattttgaattggttcatggattacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTG
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gt-ataatacctcaga-acttgcaaaagacttttcgtaaactctctggattataccttaccctgctctcggattgcc-acagGAGATCATAAAAGACCCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328920|gb|GR833292.1|GR833292
EST:     TTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAGgtgacaaaat ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
EST: gi|7234403|gb|AW569741.1|AW569741
EST:     AGAATTGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: AGAATTGGTAAAGCAAAGCAGGAATTTCAGgtgacaaaat ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
EST: gi|192309410|gb|FG999833.1|FG999833
EST:     TTGATAGCCTGGACCGTGAGAGAATCGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAGgtgacaaaat ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
EST: gi|151396333|gb|EV266210.1|EV266210
EST:     TTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAGgtgacaaaat ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
EST: gi|254345773|gb|GR859420.1|GR859420
EST:     TTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAGgtgacaaaat ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
EST: gi|151393667|gb|EV263542.1|EV263542
EST:     TTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC
genomic: TTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAGgtgacaaaat ... ttacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtgtgcttgttattctaaacaaattttgaattggttcatggattacttgcagACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTG
               ttctaaa  putative branch site (score: 2)
            ttattctaaacaaatt  TA-rich tract