Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccccctctctttcgtggaagaaactgagatccttatatggttctaatatttttcttgcttctaacttaccatgtattctgttattcgacatctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAACTG

Basic information

species Glycine max
transcript GLYMA01G41100.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41100.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 3'ss of exon 5
----------------------------------------------------------------------tccccctctctttcgtggaa---gaaactgagatcctt-atatgg----ttctaatatttttcttgcttctaacttacc--------atgtattctg---ttattcgacat-ctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAACTG
                                                                      ||   | |  ||||    |     |||  | | || || || |||    | || | || |   ||  || |   ||||         || | |||||   || ||   ||| |||  |||||  | || || || ||||| || ||| | ||||||||||| || || || || ||||| || ||||||||||||||||| ||||| ||||| |  |  |
gtgtgcttaggaaaatataaatttcttgcatatcctttgtattacatcaggagattagcacgcgtgtagatctggcacattttcagaaagttcaaaatcgtgttcttttatttgggagatgctgaaatctgaattatttatgggttacatggggataatttgttctgacattttttctcatgctgatcagGCGTTGTTCCGTAAGATTGCGGCTGCACTTCCTGGAATGGAGACCCTCTCATCAGCAAAGCAGGAAGACATGGTTGATGTGAACTTGAAGTCAAGCAACG

upper sequence: GLYMA01G41100.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 5
----------------------------------------------------------------------------------------tccccctctctttcgtggaagaaactgagatccttatatggttctaa---tatttttcttgcttctaacttaccatgtattc-tgttattcgacatctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAACTG
                                                                                        |       | ||   ||  |    ||    ||  |   ||  | |     ||| | ||    | |||  ||    ||   |           || | ||  ||||| || || || ||||||||||| ||| | ||||||||||| || || || || || ||||| ||||||||||||||||| ||||| | |||    | ||
gtatgcttcagaaatataaattcataagtttggttcatatttacaatatacttctagagcatgtgatttttatctgaaaagttcagagtagtgtgtttttctttgttaagtcctttattctctgcctgtctatgtgtttatatatcaacgtactagtttgttttgcgctgacaaccacaaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCACTTCCTGGAATGGAGACGCTCTCATCAGCGAAACAGGAAGACATGGTTGATGTGAACTTGAGGTCCGGCAATG

upper sequence: GLYMA01G41100.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv15s0021g00640.t01 (Vitis vinifera), 3'ss of exon 5
-tccccctctctttcgtggaagaaactgag--atccttatatggttctaatatttttcttgcttctaacttaccatgtattctgttattcgacatctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTA-CAACTG
 |       | ||| ||         | |   |  | |  |||| | |||  ||| | |       ||  ||      || |||  | |  |  | | |  |||| |||||||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||||||| || ||  | ||||||| ||||  
atttttgaatattttgttatttggcttcattcagtcctgcatggct-taacttttctttcttagacaaactattgaccatcctg--aatgaatctttttctagGCGCTATTTCGGAAAATTGCAGCAGCCTTACCAGGAATGGAAACACTTTCTTCAGCAAAGCAAGAAGACATGGTTGACGTCAATCTTAAGTCTAGCAACA-

upper sequence: GLYMA01G41100.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S456_9V6.1 (Physcomitrella patens), 3'ss of exon 6
tccccctctctttcgtggaagaaactgagatccttatatggttc-taatatttttctt----gcttctaacttaccatgta--ttctgttattcgacatctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAACTG---
        |   |  ||  |   | | || |  |  ||  | || | |||| |  |||      | | | | ||||||  |  |  | | || | | ||| || ||||| || ||||||||||||||||||||||||||||| |||||  |  | || ||| || ||   || ||  | |||||||| ||  | ||| | |||||     
-----gcatacgttttgatacttatt-aggttttcgtagcgctcattatatatagctttaaaagtgcaaccataccatacagctcatataatactatatc-gtgcagGCACTGTTTCGAAAAATTGCTGCAGCATTACCTGGTATGGAGGCTTTGTCATCT-CACAA--GGATGATCTTGTTGATGTCAATCTCAAGCCAACAACAAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207811829|gb|GD783078.1|GD783078
EST:     AATGTCATGTTTATTTGTAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: AATGTCATGTTTA-TTG-AAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|208219384|gb|GE020174.1|GE020174
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|254348135|gb|GR851814.1|GR851814
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|192322700|gb|FK014391.1|FK014391
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|208092652|gb|GD888471.1|GD888471
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTACGAAAAA
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTT-CGAAAAA
EST: gi|208330144|gb|GE132173.1|GE132173
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTACTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|254319918|gb|GR830942.1|GR830942
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193305604|gb|FK270961.1|FK270961
EST:     ATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: ATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|254326476|gb|GR841068.1|GR841068
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193561935|gb|FK521196.1|FK521196
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCAATTACCTGGAATGGAA
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCA-TTACCTGGAATGGAA
EST: gi|254324656|gb|GR834081.1|GR834081
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193438091|gb|FK401368.1|FK401368
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGCTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|207713162|gb|GD697146.1|GD697146
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|254349188|gb|GR859994.1|GR859994
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193652280|gb|FK599944.1|FK599944
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193326098|gb|FK291069.1|FK291069
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|12773416|gb|BG238343.1|BG238343
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|208084011|gb|GD881357.1|GD881357
EST:     TGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATC
genomic: TGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCG-AAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATC
EST: gi|193323175|gb|FK291581.1|FK291581
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193703869|gb|FK641001.1|FK641001
EST:     ATGTCATGTTTAATTAGAAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: ATGTCATGTTT-ATT-G-AAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|151410911|gb|EV280726.1|EV280726
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|254345172|gb|GR851548.1|GR851548
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|208141236|gb|GD938266.1|GD938266
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCAATTACCTGGAATGGAA
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCA-TTACCTGGAATGGAA
EST: gi|208330728|gb|GE128067.1|GE128067
EST:     TTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193485085|gb|FK450699.1|FK450699
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|23726564|gb|BU761278.1|BU761278
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|254322229|gb|GR837643.1|GR837643
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193387711|gb|FK350510.1|FK350510
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|254348134|gb|GR851813.1|GR851813
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|207730206|gb|GD705022.1|GD705022
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAA
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAA
EST: gi|192322517|gb|FK014638.1|FK014638
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193302692|gb|FK267056.1|FK267056
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|208228124|gb|GE027352.1|GE027352
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTAGCTGCAGCA
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATT-GCTGCAGCA
EST: gi|208185653|gb|GD986296.1|GD986296
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|207797755|gb|GD771567.1|GD771567
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCT
EST: gi|254321335|gb|GR824652.1|GR824652
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|11411438|gb|BF423449.1|BF423449
EST:     TGGGTTTAATATATAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|254345173|gb|GR851549.1|GR851549
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|207713733|gb|GD694848.1|GD694848
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAAC
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAAC
EST: gi|208176650|gb|GD975665.1|GD975665
EST:     TGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|193584922|gb|FK542367.1|FK542367
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAA
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAA
EST: gi|254322230|gb|GR837644.1|GR837644
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCA
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCA
EST: gi|254318145|gb|GR832313.1|GR832313
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
EST: gi|254342458|gb|GR858620.1|GR858620
EST:     TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAG                         GCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT
genomic: TCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGgtaacctggc ... atctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatttttcttgcttctaacttaccatgtattctgttattcgacatctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAACTG
     ttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccccctctctttcgtggaagaaactgagatccttatatggttctaatatttttcttgcttctaacttaccatgtattctgttattcgacatctgtacagGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAACTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
-ccccctc
- - - - - - - - ggaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt